Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | FAP39_15335 | Not Available | Positive | 3165387 - 3166307 | 34866.6 |
| aspartate/glutamate racemase family protein | FAP39_15340 | Not Available | Positive | 3166316 - 3167002 | 24403.5 |
| wyl domain-containing protein | FAP39_15345 | Not Available | Negative | 3167060 - 3167758 | 26157.7 |
| voc family protein | FAP39_15350 | Not Available | Positive | 3167911 - 3168267 | 12904.2 |
| yaeq family protein | FAP39_15355 | Not Available | Negative | 3168427 - 3168975 | 20704.6 |
| hypothetical protein | FAP39_15360 | Not Available | Positive | 3169122 - 3169391 | 9709.28 |
| hypothetical protein | FAP39_15365 | Not Available | Positive | 3169402 - 3169863 | 15864.8 |
| ai-2e family transporter | FAP39_15370 | Not Available | Positive | 3169946 - 3170467 | 18825.0 |
| duf1761 domain-containing protein | FAP39_15375 | Not Available | Negative | 3170639 - 3171031 | 13548.0 |
| eve domain-containing protein | FAP39_15380 | Not Available | Negative | 3171085 - 3171498 | 15644.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
