Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_15285 | Not Available | Positive | 3154359 - 3155039 | 25082.8 |
| hypothetical protein | FAP39_15290 | Not Available | Positive | 3155042 - 3155980 | 33584.2 |
| cardiolipin synthase | FAP39_15295 | Not Available | Positive | 3156188 - 3157594 | 52281.5 |
| yihy/virulence factor brkb family protein | FAP39_15300 | Not Available | Negative | 3157589 - 3158443 | 30868.5 |
| arac family transcriptional regulator | FAP39_15305 | Not Available | Negative | 3158768 - 3159787 | 38084.9 |
| hypothetical protein | FAP39_15310 | Not Available | Negative | 3159989 - 3160915 | 32640.4 |
| trap transporter large permease subunit | FAP39_15315 | Not Available | Negative | 3160922 - 3162235 | 47079.5 |
| trap transporter small permease subunit | FAP39_15320 | Not Available | Negative | 3162232 - 3162945 | 26691.9 |
| c4-dicarboxylate abc transporter substrate-binding protein | FAP39_15325 | Not Available | Negative | 3163007 - 3163948 | 34010.8 |
| fad-binding oxidoreductase | FAP39_15330 | Not Available | Negative | 3164035 - 3165282 | 44785.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
