Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette domain-containing protein | FAP39_15185 | Not Available | Positive | 3129876 - 3130937 | 39164.1 |
| aminopeptidase p family protein | FAP39_15190 | Not Available | Positive | 3131026 - 3132192 | 42439.8 |
| response regulator | FAP39_15195 | Not Available | Negative | 3132231 - 3134723 | 90313.0 |
| oxidoreductase | FAP39_15200 | Not Available | Negative | 3134834 - 3135355 | 18708.4 |
| alpha/beta hydrolase | FAP39_15205 | Not Available | Negative | 3135894 - 3137609 | 63554.3 |
| integrase | FAP39_15210 | Not Available | Positive | 3137841 - 3138284 | 16819.6 |
| voc family protein | FAP39_15215 | Not Available | Positive | 3138413 - 3138808 | 14727.7 |
| arac family transcriptional regulator | FAP39_15220 | Not Available | Negative | 3138901 - 3139713 | 30596.3 |
| sulfatase | FAP39_15225 | Not Available | Positive | 3139899 - 3141530 | 60319.9 |
| moad/this family protein | FAP39_15230 | Not Available | Negative | 3141654 - 3141899 | 8923.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
