Shimia litoralis strain CL-ES2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia litoralis strain CL-ES2 is classified as a Gram-negative bacterium, which is a key characteristic defining its cellular structure and staining properties. This strain possesses a single replicon, indicating a streamlined genomic organization that could influence its replication and genetic stability. The genomic sequence of this strain is accessible under the accession number SULI00000000.1, providing a resource for further research and analysis. In terms of ecological insights, bacteria such as Shimia litoralis often inhabit diverse environments, including coastal and marine ecosystems. Their Gram-negative nature suggests potential roles in biogeochemical cycles, as many Gram-negative bacteria are involved in nutrient cycling and organic matter decomposition. This strain may contribute to the microbial diversity and ecological dynamics of its native habitat, influencing nutrient availability and interactions within microbial communities. Understanding the characteristics of Shimia litoralis strain CL-ES2 can enhance our knowledge of marine microbiomes and their functional roles in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia litoralis
Strainstrain CL-ES2

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia litoralis strain CL-ES2 scaffold84, whole genome shotgun

Gene Summary

Adenine Count

808021 bp

Thymine Count

807791 bp

Guanine Count

980050 bp

Cytosine Count

974960 bp

Genome Length

3570835 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ldh family oxidoreductaseFAP39_15135Not AvailablePositive3117135 - 311814534191.6
bcct family transporterFAP39_15140Not AvailablePositive3118261 - 312008164330.2
sarcosine oxidase subunit beta family proteinFAP39_15145Not AvailablePositive3120285 - 312153545350.4
sarcosine oxidase subunit deltaFAP39_15150Not AvailablePositive3121551 - 312183810890.6
sarcosine oxidase subunit alpha family proteinFAP39_15155Not AvailablePositive3121835 - 3124792106497.0
sarcosine oxidase, gamma subunitFAP39_15160Not AvailablePositive3124776 - 312534220634.7
lysr family transcriptional regulatorFAP39_15165Not AvailablePositive3125459 - 312635832447.3
glxa family transcriptional regulatorFAP39_15170Not AvailablePositive3126397 - 312734735090.7
abc transporter substrate-binding proteinFAP39_15175Not AvailablePositive3127749 - 312872334791.8
abc transporter permease subunitFAP39_15180Not AvailablePositive3128830 - 312986137376.8

Displaying genes 3001 – 3010 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.