Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ldh family oxidoreductase | FAP39_15135 | Not Available | Positive | 3117135 - 3118145 | 34191.6 |
| bcct family transporter | FAP39_15140 | Not Available | Positive | 3118261 - 3120081 | 64330.2 |
| sarcosine oxidase subunit beta family protein | FAP39_15145 | Not Available | Positive | 3120285 - 3121535 | 45350.4 |
| sarcosine oxidase subunit delta | FAP39_15150 | Not Available | Positive | 3121551 - 3121838 | 10890.6 |
| sarcosine oxidase subunit alpha family protein | FAP39_15155 | Not Available | Positive | 3121835 - 3124792 | 106497.0 |
| sarcosine oxidase, gamma subunit | FAP39_15160 | Not Available | Positive | 3124776 - 3125342 | 20634.7 |
| lysr family transcriptional regulator | FAP39_15165 | Not Available | Positive | 3125459 - 3126358 | 32447.3 |
| glxa family transcriptional regulator | FAP39_15170 | Not Available | Positive | 3126397 - 3127347 | 35090.7 |
| abc transporter substrate-binding protein | FAP39_15175 | Not Available | Positive | 3127749 - 3128723 | 34791.8 |
| abc transporter permease subunit | FAP39_15180 | Not Available | Positive | 3128830 - 3129861 | 37376.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
