Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | FAP39_15085 | Not Available | Positive | 3105384 - 3106235 | 31311.0 |
| nad-dependent succinate-semialdehyde dehydrogenase | FAP39_15090 | Not Available | Positive | 3106314 - 3107786 | 52095.2 |
| fumarylacetoacetate hydrolase family protein | FAP39_15095 | Not Available | Positive | 3107790 - 3108644 | 31712.4 |
| 2-oxo-hepta-3-ene-1,7-dioic acid hydratase | FAP39_15100 | Not Available | Positive | 3108641 - 3109441 | 28581.8 |
| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | FAP39_15105 | Not Available | Positive | 3109453 - 3110340 | 30889.2 |
| hypothetical protein | FAP39_15110 | Not Available | Positive | 3110539 - 3112164 | 58161.3 |
| aldehyde dehydrogenase family protein | FAP39_15115 | Not Available | Positive | 3112355 - 3113806 | 51230.8 |
| membrane dipeptidase | FAP39_15120 | Not Available | Positive | 3113806 - 3114786 | 37011.4 |
| hypothetical protein | FAP39_15125 | Not Available | Positive | 3114799 - 3116493 | 63390.0 |
| duf3726 domain-containing protein | FAP39_15130 | Not Available | Positive | 3116490 - 3117119 | 21548.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
