Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease vii small subunit | FAP39_15035 | Not Available | Positive | 3092914 - 3093156 | 8624.22 |
| polyprenyl synthetase family protein | FAP39_15040 | Not Available | Positive | 3093217 - 3094026 | 28331.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | FAP39_15045 | Not Available | Positive | 3094045 - 3095973 | 68095.7 |
| hypothetical protein | FAP39_15050 | Not Available | Negative | 3096296 - 3097201 | 33928.2 |
| pqq-dependent sugar dehydrogenase | FAP39_15055 | Not Available | Negative | 3097241 - 3098446 | 44603.4 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | FAP39_15060 | Not Available | Negative | 3098714 - 3101500 | 100073.0 |
| catb-related o-acetyltransferase | FAP39_15065 | Not Available | Negative | 3101783 - 3102442 | 24052.6 |
| hypothetical protein | FAP39_15070 | Not Available | Negative | 3102435 - 3102950 | 19306.1 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | FAP39_15075 | Not Available | Positive | 3103445 - 3103834 | 14191.9 |
| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | FAP39_15080 | Not Available | Positive | 3103831 - 3105339 | 54778.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
