Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase | FAP39_14985 | Not Available | Positive | 3081314 - 3082474 | 43048.4 |
| acetate--coa ligase family protein | FAP39_14990 | Not Available | Positive | 3082543 - 3084567 | 71243.4 |
| crotonobetainyl-coa hydratase | FAP39_14995 | Not Available | Positive | 3084564 - 3085352 | 28618.2 |
| malonyl-coa synthase | FAP39_15000 | Not Available | Negative | 3085354 - 3086859 | 54216.7 |
| dmt family transporter | FAP39_15005 | Not Available | Positive | 3086986 - 3087906 | 32870.5 |
| alkaline phosphatase | FAP39_15010 | Not Available | Negative | 3087945 - 3089510 | 58042.3 |
| branched-chain amino acid aminotransferase | FAP39_15015 | Not Available | Negative | 3089740 - 3090609 | 31967.1 |
| marr family transcriptional regulator | FAP39_15020 | Not Available | Positive | 3090777 - 3091274 | 18631.3 |
| response regulator | FAP39_15025 | Not Available | Positive | 3091271 - 3091972 | 26256.8 |
| histone deacetylase family protein | FAP39_15030 | Not Available | Positive | 3091983 - 3092921 | 33911.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
