Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | FAP39_14935 | Not Available | Positive | 3072362 - 3073237 | 31009.3 |
| cytochrome c biogenesis protein ccda | FAP39_14940 | Not Available | Positive | 3073295 - 3074008 | 24626.0 |
| thioredoxin family protein | FAP39_14945 | Not Available | Positive | 3074024 - 3074440 | 15036.0 |
| peptide-methionine (r)-s-oxide reductase msrb | FAP39_14950 | Not Available | Positive | 3074606 - 3075055 | 16409.0 |
| peptide-methionine (s)-s-oxide reductase msra | FAP39_14955 | Not Available | Positive | 3075052 - 3075552 | 18777.8 |
| hu family dna-binding protein | FAP39_14960 | Not Available | Negative | 3075618 - 3075905 | 9987.33 |
| amp nucleosidase | FAP39_14965 | Not Available | Negative | 3076037 - 3077518 | 54537.7 |
| adenine deaminase | FAP39_14970 | Not Available | Negative | 3077515 - 3079323 | 63922.7 |
| hypothetical protein | FAP39_14975 | Not Available | Positive | 3079495 - 3080250 | 28099.9 |
| glxa family transcriptional regulator | FAP39_14980 | Not Available | Negative | 3080298 - 3081236 | 34579.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
