Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vut family protein | FAP39_14885 | Not Available | Positive | 3061520 - 3062143 | 22224.8 |
| aminoacyl-trna hydrolase | FAP39_14890 | Not Available | Positive | 3062512 - 3062934 | 15966.3 |
| glxa family transcriptional regulator | FAP39_14895 | Not Available | Positive | 3062975 - 3063964 | 36914.6 |
| sdr family oxidoreductase | FAP39_14900 | Not Available | Negative | 3063966 - 3064829 | 31380.5 |
| transporter | FAP39_14905 | Not Available | Negative | 3064925 - 3065869 | 33035.1 |
| chorismate synthase | FAP39_14910 | Not Available | Negative | 3065873 - 3066973 | 39404.9 |
| thiamine abc transporter substrate binding subunit | FAP39_14915 | Not Available | Positive | 3067278 - 3068255 | 35094.3 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | FAP39_14920 | Not Available | Positive | 3068231 - 3069784 | 54311.1 |
| atp-binding cassette domain-containing protein | FAP39_14925 | Not Available | Positive | 3069771 - 3070463 | 24298.4 |
| duf427 domain-containing protein | FAP39_14930 | Not Available | Negative | 3070464 - 3072023 | 56501.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
