Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_14835 | Not Available | Positive | 3050585 - 3051907 | 47259.2 |
| osmc family protein | FAP39_14840 | Not Available | Positive | 3051900 - 3052268 | 13401.0 |
| response regulator | FAP39_14845 | Not Available | Positive | 3052300 - 3054342 | 75910.4 |
| peroxide stress protein yaaa | FAP39_14850 | Not Available | Negative | 3054339 - 3055112 | 29038.9 |
| dna helicase recq | FAP39_14855 | Not Available | Negative | 3055142 - 3057181 | 73812.2 |
| yggt family protein | FAP39_14860 | Not Available | Negative | 3057283 - 3057564 | 10579.7 |
| acyl-coa thioesterase | FAP39_14865 | Not Available | Positive | 3057690 - 3058226 | 21110.6 |
| mfs transporter | FAP39_14870 | Not Available | Positive | 3058281 - 3059666 | 49602.9 |
| penicillin-insensitive murein endopeptidase | FAP39_14875 | Not Available | Positive | 3059648 - 3060562 | 33710.4 |
| esterase-like activity of phytase family protein | FAP39_14880 | Not Available | Positive | 3060535 - 3061431 | 33293.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
