Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | FAP39_14785 | Not Available | Positive | 3043156 - 3043989 | 29528.7 |
| dephospho-coa kinase | FAP39_14790 | Not Available | Positive | 3043986 - 3044579 | 21329.7 |
| dna polymerase iii subunit epsilon | FAP39_14795 | Not Available | Positive | 3044572 - 3045303 | 27129.3 |
| protein-export chaperone secb | FAP39_14800 | Not Available | Negative | 3045339 - 3045821 | 18217.8 |
| fxsa family protein | FAP39_14805 | Not Available | Negative | 3045881 - 3046369 | 17861.0 |
| tim44 domain-containing protein | FAP39_14810 | Not Available | Positive | 3046473 - 3047129 | 23794.3 |
| murein transglycosylase | FAP39_14815 | Not Available | Positive | 3047126 - 3048163 | 38678.3 |
| dna mismatch repair protein muts | FAP39_14820 | Not Available | Positive | 3048160 - 3048738 | 21298.3 |
| lrp/asnc family transcriptional regulator | FAP39_14825 | Not Available | Negative | 3048749 - 3049213 | 17230.0 |
| methionine gamma-lyase | FAP39_14830 | Not Available | Positive | 3049306 - 3050508 | 42930.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
