Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coproporphyrinogen iii oxidase | FAP39_14735 | Not Available | Positive | 3033290 - 3034447 | 43146.0 |
| duf454 domain-containing protein | FAP39_14740 | Not Available | Positive | 3034449 - 3034802 | 12702.3 |
| parb/repb/spo0j family partition protein | FAP39_14745 | Not Available | Negative | 3034792 - 3035688 | 32975.4 |
| para family protein | FAP39_14750 | Not Available | Negative | 3035704 - 3036513 | 29325.9 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | FAP39_14755 | Not Available | Negative | 3036506 - 3037129 | 22893.5 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | FAP39_14760 | Not Available | Negative | 3037129 - 3039000 | 67850.0 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | FAP39_14765 | Not Available | Negative | 3039004 - 3040302 | 46022.8 |
| transcription termination factor rho | FAP39_14770 | Not Available | Negative | 3040312 - 3041583 | 47307.1 |
| copd family protein | FAP39_14775 | Not Available | Negative | 3041702 - 3042151 | 17250.6 |
| septum formation protein maf | FAP39_14780 | Not Available | Positive | 3042560 - 3043159 | 22245.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
