Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 61 protein | FAP39_14685 | Not Available | Positive | 3020122 - 3021234 | 41905.9 |
| acyl-coa dehydrogenase | FAP39_14690 | Not Available | Negative | 3021316 - 3023085 | 63012.7 |
| arac family transcriptional regulator | FAP39_14695 | Not Available | Positive | 3023203 - 3024210 | 37674.0 |
| ribokinase | FAP39_14700 | Not Available | Negative | 3024215 - 3025099 | 30938.7 |
| nadp-dependent malic enzyme | FAP39_14705 | Not Available | Negative | 3025123 - 3027378 | 81067.2 |
| dna mismatch repair protein muts | FAP39_14710 | Not Available | Positive | 3027540 - 3030161 | 94830.5 |
| nucleotide exchange factor grpe | FAP39_14715 | Not Available | Negative | 3030226 - 3030786 | 20729.5 |
| heat-inducible transcriptional repressor hrca | FAP39_14720 | Not Available | Negative | 3030796 - 3031860 | 38939.6 |
| ribonuclease ph | FAP39_14725 | Not Available | Positive | 3031976 - 3032689 | 25230.4 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | FAP39_14730 | Not Available | Positive | 3032689 - 3033297 | 22080.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
