Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1217 domain-containing protein | FAP39_14635 | Not Available | Positive | 3007451 - 3008032 | 21286.9 |
| hypothetical protein | FAP39_14640 | Not Available | Positive | 3008489 - 3009295 | 30774.7 |
| glycosyltransferase family 2 protein | FAP39_14645 | Not Available | Positive | 3009363 - 3011114 | 66185.7 |
| glycosyltransferase family 2 protein | FAP39_14650 | Not Available | Negative | 3011118 - 3012422 | 48936.3 |
| hypothetical protein | FAP39_14655 | Not Available | Positive | 3012381 - 3013505 | 42459.6 |
| hypothetical protein | FAP39_14660 | Not Available | Positive | 3013607 - 3014485 | 33428.5 |
| hypothetical protein | FAP39_14665 | Not Available | Positive | 3014496 - 3015347 | 32568.9 |
| hypothetical protein | FAP39_14670 | Not Available | Positive | 3015489 - 3016922 | 51598.8 |
| hypothetical protein | FAP39_14675 | Not Available | Positive | 3016922 - 3017719 | 28894.6 |
| sulfatase | FAP39_14680 | Not Available | Positive | 3017716 - 3020007 | 84117.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
