Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa ester lyase | FAP39_14585 | Not Available | Positive | 3000786 - 3001745 | 34210.6 |
| hypothetical protein | FAP39_14590 | Not Available | Positive | 3001854 - 3002480 | 22060.4 |
| lrp/asnc family transcriptional regulator | FAP39_14595 | Not Available | Negative | 3002506 - 3002949 | 16140.3 |
| lyse family translocator | FAP39_14600 | Not Available | Positive | 3003032 - 3003625 | 21216.6 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | FAP39_14605 | Not Available | Positive | 3003690 - 3004652 | 35228.2 |
| gntr family transcriptional regulator | FAP39_14610 | Not Available | Negative | 3004710 - 3005360 | 24091.4 |
| m48 family metallopeptidase | FAP39_14615 | Not Available | Negative | 3005392 - 3006084 | 26091.5 |
| tigr02300 family protein | FAP39_14620 | Not Available | Positive | 3006194 - 3006517 | 11637.0 |
| Trna-ala | Not Available | Not Available | Positive | 3006603 - 3006678 | Not Available |
| merr family transcriptional regulator | FAP39_14630 | Not Available | Positive | 3006904 - 3007263 | 13360.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
