Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_14535 | Not Available | Negative | 2992073 - 2992297 | 7963.0 |
| pyruvate kinase | FAP39_14540 | Not Available | Negative | 2992329 - 2993774 | 52049.1 |
| n-formylglutamate amidohydrolase | FAP39_14545 | Not Available | Positive | 2993893 - 2994636 | 27363.5 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | FAP39_14550 | Not Available | Positive | 2994639 - 2994986 | 12624.1 |
| duf1244 domain-containing protein | FAP39_14555 | Not Available | Positive | 2995016 - 2995333 | 12126.3 |
| dioxygenase | FAP39_14560 | Not Available | Positive | 2995442 - 2996236 | 29040.2 |
| fatty acid desaturase | FAP39_14565 | Not Available | Negative | 2996233 - 2997264 | 38930.5 |
| d-amino-acid transaminase | FAP39_14570 | Not Available | Negative | 2997575 - 2998438 | 31902.3 |
| dipeptide epimerase | FAP39_14575 | Not Available | Negative | 2998450 - 2999415 | 34256.9 |
| duf1611 domain-containing protein | FAP39_14580 | Not Available | Negative | 2999486 - 3000487 | 35530.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
