Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine--fructose-6-phosphate transaminase (isomerizing) | FAP39_14485 | Not Available | Negative | 2980313 - 2982157 | 66251.8 |
| class i sam-dependent rna methyltransferase | FAP39_14490 | Not Available | Negative | 2982374 - 2983489 | 40418.6 |
| mechanosensitive ion channel | FAP39_14495 | Not Available | Negative | 2983612 - 2984418 | 28934.2 |
| ytoq family protein | FAP39_14500 | Not Available | Negative | 2984601 - 2985050 | 16085.0 |
| phenylalanine--trna ligase subunit beta | FAP39_14505 | Not Available | Negative | 2985149 - 2987548 | 85985.3 |
| phenylalanine--trna ligase subunit alpha | FAP39_14510 | Not Available | Negative | 2987682 - 2988755 | 39865.5 |
| hint domain-containing protein | FAP39_14515 | Not Available | Negative | 2988834 - 2989901 | 37581.9 |
| nnrs family protein | FAP39_14520 | Not Available | Positive | 2990126 - 2991286 | 41579.0 |
| 50s ribosomal protein l20 | FAP39_14525 | Not Available | Negative | 2991384 - 2991749 | 13516.3 |
| 50s ribosomal protein l35 | FAP39_14530 | Not Available | Negative | 2991764 - 2991964 | 7385.32 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
