Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | FAP39_14435 | Not Available | Positive | 2968611 - 2969729 | 40201.3 |
| hypothetical protein | FAP39_14440 | Not Available | Negative | 2969712 - 2970743 | 39868.3 |
| hypothetical protein | FAP39_14445 | Not Available | Positive | 2970753 - 2972354 | 57085.0 |
| cdp-alcohol phosphatidyltransferase family protein | FAP39_14450 | Not Available | Positive | 2972376 - 2972996 | 22791.9 |
| hypothetical protein | FAP39_14455 | Not Available | Negative | 2972978 - 2973736 | 28209.3 |
| cyclic peptide export abc transporter | FAP39_14460 | Not Available | Negative | 2973723 - 2975456 | 63826.1 |
| hypothetical protein | FAP39_14465 | Not Available | Negative | 2975500 - 2976453 | 36229.8 |
| hypothetical protein | FAP39_14470 | Not Available | Positive | 2976591 - 2977439 | 31847.8 |
| alpha/beta fold hydrolase | FAP39_14475 | Not Available | Negative | 2977453 - 2978295 | 30809.3 |
| alpha/beta fold hydrolase | FAP39_14480 | Not Available | Negative | 2978295 - 2980040 | 64077.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
