Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate cytidylyltransferase | FAP39_14385 | Not Available | Positive | 2959605 - 2960405 | 28926.2 |
| glycosyltransferase family 2 protein | FAP39_14390 | Not Available | Positive | 2960402 - 2961343 | 34157.7 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_14395 | Not Available | Positive | 2961429 - 2962058 | 22633.3 |
| duf4833 domain-containing protein | FAP39_14400 | Not Available | Positive | 2962055 - 2962684 | 23113.5 |
| inositol-3-phosphate synthase | FAP39_14405 | Not Available | Positive | 2962681 - 2963793 | 39472.9 |
| sdr family oxidoreductase | FAP39_14410 | Not Available | Positive | 2963793 - 2964587 | 28003.8 |
| hypothetical protein | FAP39_14415 | Not Available | Positive | 2964584 - 2965468 | 31033.3 |
| lptf/lptg family permease | FAP39_14420 | Not Available | Positive | 2965509 - 2966624 | 40051.8 |
| lptf/lptg family permease | FAP39_14425 | Not Available | Positive | 2966621 - 2967757 | 41355.8 |
| phosphocholine cytidylyltransferase family protein | FAP39_14430 | Not Available | Negative | 2967754 - 2968503 | 26953.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
