Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 4 protein | FAP39_14330 | Not Available | Positive | 2949229 - 2950353 | 41377.4 |
| transposase | FAP39_14340 | Not Available | Positive | 2951509 - 2951784 | 10558.6 |
| hypothetical protein | FAP39_14345 | Not Available | Positive | 2951781 - 2952203 | 16590.0 |
| transcriptional regulator beti | FAP39_14350 | Not Available | Negative | 2953541 - 2954119 | 21006.4 |
| choline abc transporter substrate-binding protein | FAP39_14355 | Not Available | Positive | 2954252 - 2955178 | 32706.0 |
| choline abc transporter permease subunit | FAP39_14360 | Not Available | Positive | 2955316 - 2956146 | 30244.0 |
| choline abc transporter atp-binding protein | FAP39_14365 | Not Available | Positive | 2956148 - 2957194 | 37885.8 |
| peptide-binding protein | FAP39_14370 | Not Available | Negative | 2957240 - 2957872 | 22740.8 |
| abc transporter permease | FAP39_14375 | Not Available | Negative | 2957869 - 2958690 | 30600.3 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | FAP39_14380 | Not Available | Positive | 2958808 - 2959605 | 29004.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
