Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | FAP39_14275 | Not Available | Positive | 2935454 - 2936374 | 34227.6 |
| glycosyltransferase | FAP39_14280 | Not Available | Positive | 2936089 - 2937543 | 53096.2 |
| hypothetical protein | FAP39_14285 | Not Available | Positive | 2937524 - 2939041 | 54908.4 |
| glycosyltransferase family 4 protein | FAP39_14290 | Not Available | Positive | 2939038 - 2940255 | 44128.6 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_14295 | Not Available | Positive | 2940252 - 2941190 | 33104.3 |
| nad-dependent epimerase/dehydratase family protein | FAP39_14300 | Not Available | Positive | 2941263 - 2942297 | 38283.2 |
| sdr family oxidoreductase | FAP39_14305 | Not Available | Positive | 2942299 - 2943408 | 40239.4 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolyzing) | FAP39_14310 | Not Available | Positive | 2943445 - 2944575 | 42226.8 |
| sulfotransferase | FAP39_14315 | Not Available | Positive | 2944626 - 2945381 | 28890.0 |
| acyltransferase | FAP39_14320 | Not Available | Positive | 2945397 - 2947340 | 70344.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
