Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is3 family transposase | FAP39_14220 | Not Available | Positive | 2924149 - 2924736 | 22516.0 |
| is110 family transposase | FAP39_14225 | Not Available | Positive | 2924907 - 2925959 | 38421.8 |
| hypothetical protein | FAP39_14235 | Not Available | Positive | 2926287 - 2926601 | 11283.2 |
| marr family eps-associated transcriptional regulator | FAP39_14240 | Not Available | Positive | 2927039 - 2927473 | 16117.5 |
| udp-glucose/gdp-mannose dehydrogenase family protein | FAP39_14245 | Not Available | Positive | 2927512 - 2928816 | 46194.6 |
| sdr family nad(p)-dependent oxidoreductase | FAP39_14250 | Not Available | Positive | 2928813 - 2929817 | 37503.7 |
| acyltransferase | FAP39_14255 | Not Available | Positive | 2929744 - 2931708 | 71406.6 |
| hypothetical protein | FAP39_14260 | Not Available | Positive | 2931738 - 2933000 | 46087.9 |
| glycosyltransferase family 4 protein | FAP39_14265 | Not Available | Positive | 2932993 - 2934180 | 43963.3 |
| glycosyltransferase | FAP39_14270 | Not Available | Positive | 2934177 - 2935457 | 47479.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
