Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph:quinone reductase | FAP39_14140 | Not Available | Positive | 2910046 - 2910912 | 30427.2 |
| sugar transferase | FAP39_14145 | Not Available | Negative | 2910975 - 2911184 | 7857.04 |
| hypothetical protein | FAP39_14155 | Not Available | Negative | 2911614 - 2912228 | 22580.6 |
| degt/dnrj/eryc1/strs family aminotransferase | FAP39_14160 | Not Available | Negative | 2912337 - 2913404 | 37339.9 |
| vi polysaccharide biosynthesis udp-n-acetylglucosamine c-6 dehydrogenase tvib | FAP39_14175 | Not Available | Negative | 2914952 - 2916235 | 46624.7 |
| nad-dependent epimerase/dehydratase family protein | FAP39_14180 | Not Available | Negative | 2916243 - 2917259 | 38523.0 |
| marr family eps-associated transcriptional regulator | FAP39_14185 | Not Available | Negative | 2917275 - 2917643 | 13603.5 |
| hypothetical protein | FAP39_14190 | Not Available | Negative | 2917988 - 2919388 | 49621.5 |
| transcriptional activator rfah | FAP39_14210 | Not Available | Positive | 2923098 - 2923610 | 19154.4 |
| transposase | FAP39_14215 | Not Available | Positive | 2923750 - 2924025 | 10590.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
