Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l21 | FAP39_14085 | Not Available | Negative | 2901354 - 2902004 | 22586.1 |
| duf2059 domain-containing protein | FAP39_14090 | Not Available | Negative | 2902190 - 2903029 | 30966.9 |
| Trna-ser | Not Available | Not Available | Positive | 2903158 - 2903247 | Not Available |
| hypothetical protein | FAP39_14105 | Not Available | Negative | 2904541 - 2905305 | 26137.5 |
| winged helix-turn-helix transcriptional regulator | FAP39_14110 | Not Available | Positive | 2905394 - 2905936 | 19550.2 |
| mosc domain-containing protein | FAP39_14115 | Not Available | Positive | 2905933 - 2906625 | 25261.9 |
| lysr family transcriptional regulator | FAP39_14120 | Not Available | Negative | 2906686 - 2907822 | 41991.2 |
| antibiotic biosynthesis monooxygenase | FAP39_14125 | Not Available | Positive | 2907749 - 2908042 | 10488.6 |
| polysaccharide deacetylase | FAP39_14130 | Not Available | Positive | 2908340 - 2909221 | 33277.4 |
| ybhb/ybcl family raf kinase inhibitor-like protein | FAP39_14135 | Not Available | Positive | 2909373 - 2909912 | 19179.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
