Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | FAP39_14035 | Not Available | Negative | 2893772 - 2894632 | 32165.3 |
| gnat family n-acetyltransferase | FAP39_14040 | Not Available | Negative | 2894629 - 2895408 | 28822.5 |
| duf3553 domain-containing protein | FAP39_14045 | Not Available | Negative | 2895532 - 2895714 | 6642.96 |
| histidine phosphotransferase | FAP39_14050 | Not Available | Positive | 2895744 - 2896343 | 21505.9 |
| glutamate-5-semialdehyde dehydrogenase | FAP39_14055 | Not Available | Negative | 2896340 - 2897623 | 45023.2 |
| glutamate 5-kinase | FAP39_14060 | Not Available | Negative | 2897645 - 2898751 | 38733.7 |
| gtpase obge | FAP39_14065 | Not Available | Negative | 2898739 - 2899776 | 37271.4 |
| gnat family n-acetyltransferase | FAP39_14070 | Not Available | Negative | 2899835 - 2900374 | 19479.2 |
| lyse family translocator | FAP39_14075 | Not Available | Negative | 2900387 - 2900980 | 21050.2 |
| 50s ribosomal protein l27 | FAP39_14080 | Not Available | Negative | 2901061 - 2901330 | 9473.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
