Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_13980 | Not Available | Negative | 2884228 - 2884824 | 22745.6 |
| hypothetical protein | FAP39_13985 | Not Available | Negative | 2884704 - 2884931 | 8336.99 |
| is630 family transposase | FAP39_13990 | Not Available | Negative | 2885232 - 2885864 | 23404.5 |
| na+/h+ antiporter nhaa | FAP39_13995 | Not Available | Positive | 2886172 - 2886471 | 10021.6 |
| tetr/acrr family transcriptional regulator | FAP39_14000 | Not Available | Negative | 2886449 - 2887066 | 23505.3 |
| hypothetical protein | FAP39_14010 | Not Available | Positive | 2888902 - 2889210 | 11176.5 |
| type ii 3-dehydroquinate dehydratase | FAP39_14015 | Not Available | Positive | 2890280 - 2890723 | 15400.4 |
| luxr family transcriptional regulator | FAP39_14020 | Not Available | Positive | 2890720 - 2891472 | 28276.5 |
| elongation factor ts | FAP39_14025 | Not Available | Negative | 2891851 - 2892726 | 30283.4 |
| 30s ribosomal protein s2 | FAP39_14030 | Not Available | Negative | 2892798 - 2893571 | 27751.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
