Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal body rod modification protein | FAP39_13910 | Not Available | Negative | 2859824 - 2860384 | 19275.5 |
| response regulator transcription factor | FAP39_13920 | Not Available | Negative | 2860847 - 2861467 | 22888.8 |
| hamp domain-containing histidine kinase | FAP39_13925 | Not Available | Positive | 2862203 - 2863078 | 32111.1 |
| hypothetical protein | FAP39_13935 | Not Available | Positive | 2864836 - 2865063 | 7897.88 |
| hypothetical protein | FAP39_13940 | Not Available | Negative | 2865286 - 2865699 | 14695.0 |
| hlyd family type i secretion periplasmic adaptor subunit | FAP39_13945 | Not Available | Negative | 2865704 - 2867032 | 48730.0 |
| calcium-binding protein | FAP39_13950 | Not Available | Negative | 2867047 - 2868720 | 58303.5 |
| hamp domain-containing protein | FAP39_13960 | Not Available | Positive | 2870761 - 2872620 | 68915.1 |
| response regulator | FAP39_13965 | Not Available | Positive | 2872658 - 2873050 | 14537.5 |
| hypothetical protein | FAP39_13975 | Not Available | Negative | 2873786 - 2882257 | 297408.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
