Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extracellular solute-binding protein | FAP39_13860 | Not Available | Negative | 2848652 - 2849755 | 39797.8 |
| abc transporter atp-binding protein | FAP39_13865 | Not Available | Negative | 2849837 - 2850937 | 40972.2 |
| aspartate aminotransferase family protein | FAP39_13870 | Not Available | Negative | 2851252 - 2852640 | 50170.2 |
| gntr family transcriptional regulator | FAP39_13875 | Not Available | Negative | 2852714 - 2853457 | 27230.6 |
| polyamine abc transporter substrate-binding protein | FAP39_13880 | Not Available | Positive | 2853585 - 2854670 | 39577.7 |
| abc transporter atp-binding protein | FAP39_13885 | Not Available | Positive | 2854740 - 2855867 | 41736.0 |
| abc transporter permease subunit | FAP39_13890 | Not Available | Positive | 2855871 - 2856761 | 33285.4 |
| abc transporter permease subunit | FAP39_13895 | Not Available | Positive | 2856758 - 2857576 | 29504.7 |
| fad-binding oxidoreductase | FAP39_13900 | Not Available | Positive | 2857573 - 2858898 | 48298.5 |
| aminoglycoside phosphotransferase family protein | FAP39_13905 | Not Available | Negative | 2858877 - 2859704 | 30882.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
