Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | FAP39_13755 | Not Available | Positive | 2826852 - 2828042 | 44357.1 |
| hypothetical protein | FAP39_13760 | Not Available | Positive | 2828130 - 2828516 | 13375.3 |
| hypothetical protein | FAP39_13765 | Not Available | Positive | 2828627 - 2828824 | 7320.94 |
| hypothetical protein | FAP39_13770 | Not Available | Positive | 2828878 - 2829276 | 14526.3 |
| tigr00730 family rossman fold protein | FAP39_13775 | Not Available | Negative | 2829277 - 2830110 | 31055.0 |
| threonine/serine dehydratase | FAP39_13780 | Not Available | Positive | 2830190 - 2831110 | 31553.9 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | FAP39_13785 | Not Available | Positive | 2831188 - 2832015 | 29481.2 |
| hypothetical protein | FAP39_13790 | Not Available | Positive | 2832187 - 2832951 | 28255.6 |
| phytanoyl-coa dioxygenase family protein | FAP39_13795 | Not Available | Positive | 2833039 - 2833776 | 27478.5 |
| hypothetical protein | FAP39_13805 | Not Available | Positive | 2835712 - 2836080 | 13291.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
