Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | FAP39_13705 | Not Available | Positive | 2815648 - 2816211 | 20221.8 |
| glycine c-acetyltransferase | FAP39_13710 | Not Available | Positive | 2816366 - 2817553 | 42998.9 |
| l-threonine 3-dehydrogenase | FAP39_13715 | Not Available | Positive | 2817568 - 2818599 | 37051.6 |
| serine/threonine protein phosphatase | FAP39_13720 | Not Available | Negative | 2818935 - 2819669 | 27076.2 |
| phosphoglycerate dehydrogenase | FAP39_13725 | Not Available | Negative | 2819769 - 2821364 | 56639.5 |
| phosphoserine transaminase | FAP39_13730 | Not Available | Negative | 2821434 - 2822576 | 40828.5 |
| phosphoserine phosphatase serb | FAP39_13735 | Not Available | Positive | 2822949 - 2823824 | 30909.2 |
| asparaginase | FAP39_13740 | Not Available | Negative | 2823852 - 2824850 | 35309.3 |
| hypothetical protein | FAP39_13745 | Not Available | Positive | 2825014 - 2825541 | 18626.1 |
| hint domain-containing protein | FAP39_13750 | Not Available | Positive | 2825677 - 2826681 | 36195.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
