Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2852 domain-containing protein | FAP39_13655 | Not Available | Negative | 2802359 - 2802787 | 16064.0 |
| hypothetical protein | FAP39_13660 | Not Available | Positive | 2803157 - 2803720 | 21733.0 |
| dna adenine methylase | FAP39_13665 | Not Available | Negative | 2803808 - 2804638 | 31588.1 |
| hypothetical protein | FAP39_13670 | Not Available | Negative | 2804773 - 2805288 | 18467.7 |
| hypothetical protein | FAP39_13675 | Not Available | Negative | 2805288 - 2805593 | 10731.9 |
| lamg domain-containing protein | FAP39_13680 | Not Available | Negative | 2805607 - 2806245 | 22882.9 |
| hypothetical protein | FAP39_13685 | Not Available | Negative | 2806479 - 2806658 | 6776.24 |
| alpha-2-macroglobulin family protein | FAP39_13690 | Not Available | Positive | 2806802 - 2812234 | 195850.0 |
| penicillin-binding protein 1c | FAP39_13695 | Not Available | Positive | 2812234 - 2814276 | 73945.1 |
| acetyl-coa c-acyltransferase | FAP39_13700 | Not Available | Negative | 2814348 - 2815523 | 40095.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
