Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_13605 | Not Available | Positive | 2790897 - 2791271 | 13591.8 |
| acetolactate synthase small subunit | FAP39_13610 | Not Available | Negative | 2791339 - 2791902 | 20126.2 |
| acetolactate synthase 3 large subunit | FAP39_13615 | Not Available | Negative | 2791914 - 2793668 | 63683.2 |
| response regulator transcription factor | FAP39_13620 | Not Available | Negative | 2794026 - 2794670 | 23382.1 |
| histidine kinase | FAP39_13625 | Not Available | Negative | 2794667 - 2796091 | 52483.1 |
| twin-arginine translocation signal domain-containing protein | FAP39_13630 | Not Available | Positive | 2796337 - 2797419 | 38632.3 |
| c4-dicarboxylate abc transporter permease | FAP39_13635 | Not Available | Positive | 2797515 - 2798429 | 35256.4 |
| trap transporter large permease subunit | FAP39_13640 | Not Available | Positive | 2798447 - 2800801 | 82520.6 |
| arginyltransferase | FAP39_13645 | Not Available | Negative | 2800895 - 2801713 | 30645.4 |
| rdd family protein | FAP39_13650 | Not Available | Negative | 2801792 - 2802241 | 16708.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
