Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | FAP39_13555 | Not Available | Positive | 2777972 - 2779090 | 39684.6 |
| dsba family protein | FAP39_13560 | Not Available | Negative | 2779157 - 2779906 | 27140.5 |
| tetratricopeptide repeat protein | FAP39_13565 | Not Available | Negative | 2779920 - 2781275 | 49408.4 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | FAP39_13570 | Not Available | Positive | 2781298 - 2782449 | 41845.8 |
| amin domain-containing protein | FAP39_13575 | Not Available | Positive | 2782507 - 2783730 | 44535.8 |
| penicillin-binding protein 1a | FAP39_13580 | Not Available | Positive | 2783856 - 2786408 | 93309.8 |
| duf418 domain-containing protein | FAP39_13585 | Not Available | Negative | 2786337 - 2787473 | 41126.7 |
| peptide chain release factor 2 | FAP39_13590 | Not Available | Positive | 2787618 - 2788745 | 41796.4 |
| duf2189 domain-containing protein | FAP39_13595 | Not Available | Positive | 2788966 - 2789742 | 28722.0 |
| helix-turn-helix transcriptional regulator | FAP39_13600 | Not Available | Negative | 2789857 - 2790615 | 28692.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
