Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | FAP39_13505 | Not Available | Positive | 2770872 - 2771387 | 19574.6 |
| transcriptional regulator | FAP39_13510 | Not Available | Positive | 2771389 - 2772024 | 22477.9 |
| hypothetical protein | FAP39_13515 | Not Available | Positive | 2772177 - 2772683 | 19796.6 |
| hypothetical protein | FAP39_13520 | Not Available | Negative | 2772795 - 2772977 | 6092.19 |
| Trna-asp | Not Available | Not Available | Positive | 2773182 - 2773258 | Not Available |
| Trna-asp | Not Available | Not Available | Positive | 2773313 - 2773389 | Not Available |
| rnd transporter | FAP39_13535 | Not Available | Positive | 2773449 - 2773676 | 8539.89 |
| m20/m25/m40 family metallo-hydrolase | FAP39_13540 | Not Available | Negative | 2773763 - 2775136 | 50078.9 |
| 5-aminolevulinate synthase | FAP39_13545 | Not Available | Positive | 2775317 - 2776579 | 45839.9 |
| duf4115 domain-containing protein | FAP39_13550 | Not Available | Positive | 2776690 - 2777886 | 42512.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
