Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| suf system fe-s cluster assembly protein | FAP39_13455 | Not Available | Negative | 2761658 - 2762020 | 13038.5 |
| hypothetical protein | FAP39_13460 | Not Available | Negative | 2762187 - 2762462 | 9571.99 |
| spfh/band 7/phb domain protein | FAP39_13465 | Not Available | Negative | 2762462 - 2763352 | 32378.9 |
| trna guanosine(34) transglycosylase tgt | FAP39_13470 | Not Available | Positive | 2763459 - 2764589 | 41468.9 |
| endopeptidase la | FAP39_13475 | Not Available | Positive | 2764812 - 2767208 | 87743.8 |
| hu family dna-binding protein | FAP39_13480 | Not Available | Positive | 2767391 - 2767789 | 13827.9 |
| Trna-val | Not Available | Not Available | Positive | 2767809 - 2767884 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 2768153 - 2768228 | Not Available |
| hypothetical protein | FAP39_13495 | Not Available | Positive | 2768427 - 2770370 | 72217.6 |
| Trna-val | Not Available | Not Available | Positive | 2770494 - 2770569 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
