Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uroporphyrinogen-iii c-methyltransferase | FAP39_13405 | Not Available | Negative | 2750552 - 2751940 | 49808.9 |
| lrp/asnc family transcriptional regulator | FAP39_13410 | Not Available | Positive | 2752084 - 2752554 | 17848.5 |
| sensor histidine kinase | FAP39_13415 | Not Available | Positive | 2752647 - 2754401 | 63472.4 |
| sigma-54-dependent fis family transcriptional regulator | FAP39_13420 | Not Available | Positive | 2754398 - 2755627 | 44319.4 |
| hypothetical protein | FAP39_13425 | Not Available | Negative | 2755662 - 2756738 | 39721.9 |
| dctp family trap transporter solute-binding subunit | FAP39_13430 | Not Available | Positive | 2757087 - 2758091 | 36583.2 |
| trap transporter small permease | FAP39_13435 | Not Available | Positive | 2758177 - 2758887 | 26763.8 |
| trap transporter large permease | FAP39_13440 | Not Available | Positive | 2758887 - 2760281 | 48592.9 |
| triose-phosphate isomerase | FAP39_13445 | Not Available | Negative | 2760369 - 2761118 | 25802.4 |
| iron-sulfur cluster assembly accessory protein | FAP39_13450 | Not Available | Negative | 2761279 - 2761629 | 12446.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
