Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | FAP39_13350 | Not Available | Positive | 2737662 - 2739089 | 51536.3 |
| fkbm family methyltransferase | FAP39_13355 | Not Available | Positive | 2739208 - 2741133 | 71980.7 |
| low molecular weight phosphatase family protein | FAP39_13360 | Not Available | Negative | 2741143 - 2741601 | 17399.7 |
| upf0262 family protein | FAP39_13365 | Not Available | Negative | 2741607 - 2742086 | 18321.9 |
| histidinol dehydrogenase | FAP39_13370 | Not Available | Negative | 2742197 - 2743498 | 45992.6 |
| ferredoxin--nadp reductase | FAP39_13380 | Not Available | Negative | 2746419 - 2747276 | 32094.4 |
| duf934 domain-containing protein | FAP39_13385 | Not Available | Negative | 2747378 - 2747803 | 15734.3 |
| phosphoadenylyl-sulfate reductase | FAP39_13390 | Not Available | Negative | 2747800 - 2748597 | 29124.8 |
| nitrite/sulfite reductase | FAP39_13395 | Not Available | Negative | 2748587 - 2750254 | 61714.3 |
| duf2849 domain-containing protein | FAP39_13400 | Not Available | Negative | 2750247 - 2750552 | 11094.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
