Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2125 domain-containing protein | FAP39_13300 | Not Available | Positive | 2727049 - 2728044 | 36135.2 |
| extensin family protein | FAP39_13305 | Not Available | Negative | 2728041 - 2728886 | 29093.4 |
| prephenate/arogenate dehydrogenase family protein | FAP39_13310 | Not Available | Negative | 2728886 - 2729812 | 33437.7 |
| histidinol-phosphate transaminase | FAP39_13315 | Not Available | Negative | 2729809 - 2730894 | 38563.9 |
| 30s ribosomal protein s4 | FAP39_13320 | Not Available | Negative | 2731232 - 2731852 | 23643.6 |
| hint domain-containing protein | FAP39_13325 | Not Available | Negative | 2732092 - 2733153 | 38186.3 |
| lipid a deacylase lpxr family protein | FAP39_13330 | Not Available | Negative | 2733251 - 2734165 | 33129.2 |
| gdp-mannose 4,6-dehydratase | FAP39_13335 | Not Available | Positive | 2734423 - 2735544 | 42437.4 |
| gdp-l-fucose synthase | FAP39_13340 | Not Available | Positive | 2735549 - 2736484 | 34210.8 |
| degt/dnrj/eryc1/strs family aminotransferase | FAP39_13345 | Not Available | Positive | 2736481 - 2737647 | 43061.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
