Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing protein | FAP39_13250 | Not Available | Negative | 2713278 - 2714996 | 62187.3 |
| response regulator transcription factor | FAP39_13255 | Not Available | Negative | 2715005 - 2715706 | 26777.2 |
| phosphoenolpyruvate carboxykinase | FAP39_13260 | Not Available | Positive | 2716067 - 2717665 | 58446.1 |
| class i sam-dependent methyltransferase | FAP39_13265 | Not Available | Negative | 2717918 - 2718658 | 27233.1 |
| hydroxyacylglutathione hydrolase | FAP39_13270 | Not Available | Positive | 2718720 - 2719487 | 27369.5 |
| atp-dependent clp protease atp-binding subunit clpa | FAP39_13275 | Not Available | Positive | 2719663 - 2721984 | 84613.3 |
| m23 family metallopeptidase | FAP39_13280 | Not Available | Positive | 2721981 - 2722934 | 34098.0 |
| peptidoglycan -binding protein | FAP39_13285 | Not Available | Negative | 2722939 - 2725170 | 79530.8 |
| biopolymer transporter exbb | FAP39_13290 | Not Available | Negative | 2725171 - 2726358 | 42868.0 |
| gamma-glutamylcyclotransferase | FAP39_13295 | Not Available | Negative | 2726452 - 2726976 | 19571.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
