Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transfer flavoprotein subunit beta/fixa family protein | FAP39_13150 | Not Available | Positive | 2687834 - 2688592 | 26854.5 |
| electron transfer flavoprotein subunit alpha/fixb family protein | FAP39_13155 | Not Available | Positive | 2688592 - 2689521 | 31216.9 |
| hypothetical protein | FAP39_13160 | Not Available | Negative | 2689604 - 2691100 | 54083.9 |
| chat domain-containing protein | FAP39_13165 | Not Available | Negative | 2691100 - 2692761 | 59539.8 |
| caspase family protein | FAP39_13170 | Not Available | Negative | 2692765 - 2694852 | 74369.0 |
| hypothetical protein | FAP39_13175 | Not Available | Negative | 2694863 - 2695519 | 23131.0 |
| pdz domain-containing protein | FAP39_13180 | Not Available | Positive | 2695682 - 2697004 | 46827.1 |
| response regulator transcription factor | FAP39_13185 | Not Available | Positive | 2697033 - 2697728 | 25503.6 |
| hamp domain-containing protein | FAP39_13190 | Not Available | Positive | 2697725 - 2699101 | 50328.7 |
| hypothetical protein | FAP39_13195 | Not Available | Positive | 2699022 - 2700584 | 56167.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
