Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-lactamase family protein | FAP39_13100 | Not Available | Positive | 2677028 - 2678197 | 41560.6 |
| hypothetical protein | FAP39_13105 | Not Available | Negative | 2678427 - 2679038 | 22021.4 |
| cytochrome p450 | FAP39_13110 | Not Available | Positive | 2679187 - 2680569 | 51247.6 |
| dna topoisomerase iv subunit a | FAP39_13115 | Not Available | Negative | 2680598 - 2682937 | 86765.3 |
| hypothetical protein | FAP39_13120 | Not Available | Positive | 2683092 - 2683724 | 22288.6 |
| sdr family oxidoreductase | FAP39_13125 | Not Available | Positive | 2683783 - 2684616 | 31001.3 |
| hypothetical protein | FAP39_13130 | Not Available | Negative | 2684613 - 2685668 | 40789.8 |
| twin transmembrane helix small protein | FAP39_13135 | Not Available | Positive | 2685921 - 2686124 | 7350.4 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | FAP39_13140 | Not Available | Positive | 2686129 - 2686701 | 20638.3 |
| enoyl-coa hydratase/isomerase family protein | FAP39_13145 | Not Available | Negative | 2686758 - 2687618 | 30575.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
