Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional nicotinamidase/pyrazinamidase | FAP39_13050 | Not Available | Positive | 2665413 - 2666021 | 21623.2 |
| nicotinate phosphoribosyltransferase | FAP39_13055 | Not Available | Positive | 2666147 - 2667439 | 49784.7 |
| 3-hydroxyacyl-coa dehydrogenase | FAP39_13060 | Not Available | Positive | 2667645 - 2669738 | 74220.6 |
| acetyl-coa c-acyltransferase | FAP39_13065 | Not Available | Positive | 2669749 - 2670918 | 40795.9 |
| pimeloyl-coa dehydrogenase large subunit | FAP39_13070 | Not Available | Positive | 2670931 - 2672127 | 43664.3 |
| pimeloyl-coa dehydrogenase small subunit | FAP39_13075 | Not Available | Positive | 2672138 - 2673268 | 40055.6 |
| paai family thioesterase | FAP39_13080 | Not Available | Positive | 2673265 - 2673693 | 15057.1 |
| enoyl-coa hydratase | FAP39_13085 | Not Available | Positive | 2673690 - 2674478 | 27470.2 |
| acyl--coa ligase | FAP39_13090 | Not Available | Positive | 2674481 - 2675998 | 54265.2 |
| iclr family transcriptional regulator | FAP39_13095 | Not Available | Positive | 2676047 - 2676835 | 27918.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
