Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-lys | Not Available | Not Available | Positive | 2655535 - 2655610 | Not Available |
| hypothetical protein | FAP39_13000 | Not Available | Positive | 2655761 - 2657410 | 61118.6 |
| diaminopimelate epimerase | FAP39_13005 | Not Available | Positive | 2657454 - 2658284 | 29805.6 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | FAP39_13010 | Not Available | Positive | 2658284 - 2659540 | 46524.1 |
| glutathione s-transferase | FAP39_13015 | Not Available | Positive | 2659576 - 2660223 | 24603.5 |
| 6,7-dimethyl-8-ribityllumazine synthase | FAP39_13020 | Not Available | Negative | 2660269 - 2660706 | 15871.8 |
| fmn-binding negative transcriptional regulator | FAP39_13025 | Not Available | Positive | 2661013 - 2661645 | 23145.9 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | FAP39_13035 | Not Available | Positive | 2662539 - 2663099 | 20001.6 |
| cytochrome b | FAP39_13040 | Not Available | Positive | 2663111 - 2664424 | 49441.1 |
| cytochrome c1 | FAP39_13045 | Not Available | Positive | 2664441 - 2665232 | 28410.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
