Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter substrate-binding protein | FAP39_12945 | Not Available | Negative | 2640336 - 2641397 | 38648.9 |
| flagellar basal body p-ring protein flgi | FAP39_12950 | Not Available | Negative | 2641655 - 2642758 | 38827.8 |
| hypothetical protein | FAP39_12955 | Not Available | Negative | 2642755 - 2643765 | 35879.0 |
| flagellar hook-associated protein flgk | FAP39_12960 | Not Available | Negative | 2643768 - 2645210 | 51047.5 |
| flagellar hook-basal body complex protein | FAP39_12965 | Not Available | Negative | 2645234 - 2646556 | 45956.6 |
| chemotaxis protein motb | FAP39_12970 | Not Available | Negative | 2646626 - 2647465 | 30762.0 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | FAP39_12975 | Not Available | Negative | 2647555 - 2648139 | 21588.3 |
| outer membrane protein assembly factor | FAP39_12980 | Not Available | Positive | 2648418 - 2650223 | 64063.0 |
| hypothetical protein | FAP39_12985 | Not Available | Positive | 2650187 - 2653663 | 120925.0 |
| m20/m25/m40 family metallo-hydrolase | FAP39_12990 | Not Available | Positive | 2653795 - 2655264 | 52701.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
