Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase | FAP39_12890 | Not Available | Positive | 2629562 - 2630137 | 21547.1 |
| hypothetical protein | FAP39_12895 | Not Available | Negative | 2630126 - 2630422 | 10799.7 |
| is66 family transposase | FAP39_12900 | Not Available | Negative | 2630422 - 2632032 | 59911.9 |
| is66 family insertion sequence element accessory protein tnpb | FAP39_12905 | Not Available | Negative | 2632094 - 2632387 | 10938.3 |
| is66 family insertion sequence element accessory protein tnpb | FAP39_12910 | Not Available | Negative | 2632438 - 2632812 | 13820.4 |
| calcium-binding protein | FAP39_12915 | Not Available | Negative | 2633114 - 2634190 | 36624.0 |
| hypothetical protein | FAP39_12920 | Not Available | Negative | 2634112 - 2635548 | 50221.7 |
| hypothetical protein | FAP39_12930 | Not Available | Positive | 2636720 - 2637505 | 29844.6 |
| polysaccharide biosynthesis tyrosine autokinase | FAP39_12935 | Not Available | Negative | 2637688 - 2639865 | 80022.0 |
| low molecular weight phosphotyrosine protein phosphatase | FAP39_12940 | Not Available | Negative | 2639866 - 2640312 | 15680.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
