Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide transport periplasmic protein lpta | FAP39_12840 | Not Available | Negative | 2620823 - 2621311 | 17173.5 |
| hypothetical protein | FAP39_12845 | Not Available | Negative | 2621298 - 2622038 | 26669.8 |
| kpsf/gutq family sugar-phosphate isomerase | FAP39_12850 | Not Available | Negative | 2621935 - 2622903 | 34050.4 |
| ribonuclease d | FAP39_12855 | Not Available | Negative | 2622903 - 2623514 | 22808.3 |
| glycosyltransferase | FAP39_12860 | Not Available | Negative | 2623610 - 2624629 | 38407.1 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | FAP39_12865 | Not Available | Positive | 2624722 - 2625318 | 21927.9 |
| dtdp-glucose 4,6-dehydratase | FAP39_12870 | Not Available | Positive | 2625321 - 2626361 | 38037.9 |
| dtdp-4-dehydrorhamnose reductase | FAP39_12875 | Not Available | Positive | 2626358 - 2627230 | 30749.1 |
| glucose-1-phosphate thymidylyltransferase rfba | FAP39_12880 | Not Available | Positive | 2627217 - 2628089 | 31296.4 |
| udp-glucose/gdp-mannose dehydrogenase family protein | FAP39_12885 | Not Available | Positive | 2628161 - 2629483 | 47737.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
