Shimia litoralis strain CL-ES2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia litoralis strain CL-ES2 is classified as a Gram-negative bacterium, which is a key characteristic defining its cellular structure and staining properties. This strain possesses a single replicon, indicating a streamlined genomic organization that could influence its replication and genetic stability. The genomic sequence of this strain is accessible under the accession number SULI00000000.1, providing a resource for further research and analysis. In terms of ecological insights, bacteria such as Shimia litoralis often inhabit diverse environments, including coastal and marine ecosystems. Their Gram-negative nature suggests potential roles in biogeochemical cycles, as many Gram-negative bacteria are involved in nutrient cycling and organic matter decomposition. This strain may contribute to the microbial diversity and ecological dynamics of its native habitat, influencing nutrient availability and interactions within microbial communities. Understanding the characteristics of Shimia litoralis strain CL-ES2 can enhance our knowledge of marine microbiomes and their functional roles in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia litoralis
Strainstrain CL-ES2

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia litoralis strain CL-ES2 scaffold84, whole genome shotgun

Gene Summary

Adenine Count

808021 bp

Thymine Count

807791 bp

Guanine Count

980050 bp

Cytosine Count

974960 bp

Genome Length

3570835 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide transport periplasmic protein lptaFAP39_12840Not AvailableNegative2620823 - 262131117173.5
hypothetical proteinFAP39_12845Not AvailableNegative2621298 - 262203826669.8
kpsf/gutq family sugar-phosphate isomeraseFAP39_12850Not AvailableNegative2621935 - 262290334050.4
ribonuclease dFAP39_12855Not AvailableNegative2622903 - 262351422808.3
glycosyltransferaseFAP39_12860Not AvailableNegative2623610 - 262462938407.1
dtdp-4-dehydrorhamnose 3,5-epimeraseFAP39_12865Not AvailablePositive2624722 - 262531821927.9
dtdp-glucose 4,6-dehydrataseFAP39_12870Not AvailablePositive2625321 - 262636138037.9
dtdp-4-dehydrorhamnose reductaseFAP39_12875Not AvailablePositive2626358 - 262723030749.1
glucose-1-phosphate thymidylyltransferase rfbaFAP39_12880Not AvailablePositive2627217 - 262808931296.4
udp-glucose/gdp-mannose dehydrogenase family proteinFAP39_12885Not AvailablePositive2628161 - 262948347737.6

Displaying genes 2561 – 2570 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.