Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FAP39_12785 | Not Available | Negative | 2609075 - 2610214 | 42171.6 |
| utp--glucose-1-phosphate uridylyltransferase galu | FAP39_12795 | Not Available | Positive | 2611402 - 2612295 | 32458.3 |
| udp-glucose 4-epimerase gale | FAP39_12800 | Not Available | Positive | 2612314 - 2613297 | 36101.4 |
| glycosyltransferase family 4 protein | FAP39_12805 | Not Available | Positive | 2613278 - 2614534 | 46513.5 |
| glycosyltransferase family 2 protein | FAP39_12810 | Not Available | Positive | 2614587 - 2615597 | 39775.4 |
| glycosyl transferase | FAP39_12815 | Not Available | Positive | 2615594 - 2617291 | 65116.2 |
| sulfotransferase family protein | FAP39_12820 | Not Available | Positive | 2617298 - 2618725 | 53616.8 |
| pts lactose transporter subunit iic | FAP39_12825 | Not Available | Negative | 2618739 - 2619203 | 16419.9 |
| ribosome-associated translation inhibitor raia | FAP39_12830 | Not Available | Negative | 2619245 - 2619814 | 21096.1 |
| lps export abc transporter atp-binding protein | FAP39_12835 | Not Available | Negative | 2620065 - 2620823 | 28210.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
