Shimia litoralis strain CL-ES2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia litoralis strain CL-ES2 is classified as a Gram-negative bacterium, which is a key characteristic defining its cellular structure and staining properties. This strain possesses a single replicon, indicating a streamlined genomic organization that could influence its replication and genetic stability. The genomic sequence of this strain is accessible under the accession number SULI00000000.1, providing a resource for further research and analysis. In terms of ecological insights, bacteria such as Shimia litoralis often inhabit diverse environments, including coastal and marine ecosystems. Their Gram-negative nature suggests potential roles in biogeochemical cycles, as many Gram-negative bacteria are involved in nutrient cycling and organic matter decomposition. This strain may contribute to the microbial diversity and ecological dynamics of its native habitat, influencing nutrient availability and interactions within microbial communities. Understanding the characteristics of Shimia litoralis strain CL-ES2 can enhance our knowledge of marine microbiomes and their functional roles in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia litoralis
Strainstrain CL-ES2

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia litoralis strain CL-ES2 scaffold84, whole genome shotgun

Gene Summary

Adenine Count

808021 bp

Thymine Count

807791 bp

Guanine Count

980050 bp

Cytosine Count

974960 bp

Genome Length

3570835 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-polyprenylphenol 6-hydroxylaseFAP39_12730Not AvailableNegative2596110 - 259764256192.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieFAP39_12735Not AvailableNegative2597639 - 259839128191.8
hypothetical proteinFAP39_12740Not AvailablePositive2598497 - 259912323564.8
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseFAP39_12745Not AvailablePositive2599102 - 259995331521.8
enoyl-coa hydrataseFAP39_12750Not AvailablePositive2600018 - 260079427825.6
30s ribosomal protein s20FAP39_12755Not AvailablePositive2601023 - 26012869742.87
chromosomal replication initiator protein dnaaFAP39_12760Not AvailablePositive2601717 - 260316854959.8
dna polymerase iii subunit betaFAP39_12765Not AvailablePositive2603418 - 260453640575.3
dna replication/repair protein recfFAP39_12770Not AvailablePositive2604593 - 260568741050.8
dna topoisomerase (atp-hydrolyzing) subunit bFAP39_12775Not AvailablePositive2605842 - 260825989112.9

Displaying genes 2541 – 2550 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.