Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-polyprenylphenol 6-hydroxylase | FAP39_12730 | Not Available | Negative | 2596110 - 2597642 | 56192.9 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | FAP39_12735 | Not Available | Negative | 2597639 - 2598391 | 28191.8 |
| hypothetical protein | FAP39_12740 | Not Available | Positive | 2598497 - 2599123 | 23564.8 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | FAP39_12745 | Not Available | Positive | 2599102 - 2599953 | 31521.8 |
| enoyl-coa hydratase | FAP39_12750 | Not Available | Positive | 2600018 - 2600794 | 27825.6 |
| 30s ribosomal protein s20 | FAP39_12755 | Not Available | Positive | 2601023 - 2601286 | 9742.87 |
| chromosomal replication initiator protein dnaa | FAP39_12760 | Not Available | Positive | 2601717 - 2603168 | 54959.8 |
| dna polymerase iii subunit beta | FAP39_12765 | Not Available | Positive | 2603418 - 2604536 | 40575.3 |
| dna replication/repair protein recf | FAP39_12770 | Not Available | Positive | 2604593 - 2605687 | 41050.8 |
| dna topoisomerase (atp-hydrolyzing) subunit b | FAP39_12775 | Not Available | Positive | 2605842 - 2608259 | 89112.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
