Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | FAP39_12680 | Not Available | Negative | 2586757 - 2587401 | 24140.2 |
| methylated-dna--[protein]-cysteine s-methyltransferase | FAP39_12685 | Not Available | Positive | 2587591 - 2588472 | 32509.8 |
| ompa family protein | FAP39_12690 | Not Available | Positive | 2588556 - 2589206 | 22620.6 |
| nad(p)h-dependent oxidoreductase | FAP39_12695 | Not Available | Positive | 2589316 - 2589861 | 19376.3 |
| voc family protein | FAP39_12700 | Not Available | Negative | 2589894 - 2590301 | 14712.5 |
| fad-dependent oxidoreductase | FAP39_12705 | Not Available | Negative | 2590386 - 2591429 | 36497.6 |
| fad-dependent oxidoreductase | FAP39_12710 | Not Available | Positive | 2591489 - 2592163 | 24744.0 |
| dmt family transporter | FAP39_12715 | Not Available | Positive | 2592160 - 2593026 | 31502.5 |
| lytic transglycosylase domain-containing protein | FAP39_12720 | Not Available | Negative | 2593033 - 2594988 | 72812.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | FAP39_12725 | Not Available | Positive | 2595152 - 2596024 | 30578.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
