Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia litoralis |
| Strain | strain CL-ES2 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
808021 bp
Thymine Count
807791 bp
Guanine Count
980050 bp
Cytosine Count
974960 bp
Genome Length
3570835 bp
Protein-coding Genes
3325 genes
Non-Coding Genes
95 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine phosphatase family protein | FAP39_12630 | Not Available | Positive | 2574915 - 2575574 | 24530.0 |
| zinc-finger domain-containing protein | FAP39_12635 | Not Available | Negative | 2575625 - 2575801 | 6461.52 |
| abc transporter atp-binding protein | FAP39_12640 | Not Available | Positive | 2575888 - 2576820 | 33718.6 |
| glycosyl transferase | FAP39_12645 | Not Available | Negative | 2576823 - 2578400 | 61462.4 |
| sulfotransferase family protein | FAP39_12650 | Not Available | Positive | 2578554 - 2579372 | 31489.0 |
| tetr/acrr family transcriptional regulator | FAP39_12655 | Not Available | Negative | 2579646 - 2580257 | 23177.0 |
| aldehyde dehydrogenase family protein | FAP39_12660 | Not Available | Negative | 2580313 - 2582052 | 62899.9 |
| long-chain-fatty-acid--coa ligase | FAP39_12665 | Not Available | Negative | 2582054 - 2583682 | 58589.2 |
| glucose-methanol-choline oxidoreductase | FAP39_12670 | Not Available | Negative | 2583720 - 2585339 | 58830.9 |
| adenosine kinase | FAP39_12675 | Not Available | Negative | 2585774 - 2586760 | 34811.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
